Installation¶
Virtualenv and pip¶
For a traditional installation of Nebulizer, first set up a Python
virtualenv (this example creates a new one in .venv
) and then
install with pip
:
$ virtualenv .venv;
$ source .venv/bin/activate
$ pip install nebulizer
When installed this way, Nebulizer can be upgraded as follows:
$ . .venv/bin/activate
$ pip install -U nebulizer
To install or update to the latest development branch of Nebulizer
with pip
, use the following pip install
idiom instead:
$ pip install -U git+git://github.com/pjbriggs/nebulizer.git@devel
Nebulizer should work with recent Python 3 versions.
Conda¶
Nebulizer can be installed using Conda (most easily obtained via the Miniconda Python distribution):
$ conda config --add channels bioconda
$ conda install nebulizer
Note that the version available via bioconda
may lag the
most recent version available via pip
.